Thank you both so much for getting back to me. My trouble for troubleshooting was when going to an old branch to test I forgot I had merged that branch with main. A coworker got the same issue when he blew away his DB to start fresh and run uSync. So I knew it wasn’t just me. Anyway, he had an even older branch and it worked fine so we started testing and found out when it was when we started adding compression.
We comment out app.MapStaticAssets(); in our program to turn off compression for the css and js and then the setup works. Then we uncomment it and it works like normal after the setup script runs. We are debugging from there but that’s an easier place now that we know what causes it.
Thank you both for your suggestions!